"We will provide $1.2 million worth of medication, medical consumables and medical equipment, and the World Health Organization will ship it to Gaza," Akdag was quoted as saying by the Anadolu news agency.
The deputy prime minister also called on the Turkish citizens to join the nationwide campaign by donating money via bank accounts or sending a text message.
The Israeli forces have been suppressing the demonstrators using lethal weapons, citing security concerns. Since the start of the riots, more than 110 Palestinians were killed.
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The situation on the Israeli border with the Gaza Strip has significantly deteriorated over the past several months. Since March 30, the Palestinians have been holding mass rallies near the Gaza Strip border, known as the Great March of Return. The demonstrators claim the right of return for people displaced during the war after Israel's creation in 1948.